DNA Damage Atlas

GSM5827044-DIP_8oxodG_MCF10A_UV_treated_IP

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17677056


Source Project ID:   

GSE194053

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Dose:   

40J/m2


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

OxiDIP-Seq


Others:   

control: GSM5827045-DIP_8oxodG_MCF10A_UV_treated_Input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2250775350507793315077578848.8134/
chr224280620724280848124280709043.3598/
chr319404713619404916619404837441.2282/
chr127412826274137052741321540.9908/
chr515993089215993245315993182040.3827/
chrX67872316678739106787297137.953/
chr122716533822716695922716595837.7333/
chr514903391914903561714903494937.6756/
chr776626090766284937662686437.4436/
chr120259314520259484820259408036.8977/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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