DNA Damage Atlas

GSM5827046-DIP_8oxodG_MCF10A_NAC_treated_IP_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17677054


Source Project ID:   

GSE194053

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

N-acetyl-l-cysteine


Treatment Time:   

1hr


Treatment Dose:   

1mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

OxiDIP-Seq


Others:   

control: GSM5827048-DIP_8oxodG_MCF10A_NAC_treated_Input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA310953260031999347.679/
rDNA280382882028551279.082/
rDNA231612381223569218.827/
chrUn_gl000220131602132039131840104.282/
rDNA27051274562725490.6336/
chrUn_gl00021463928661426452066.5992/
chrUn_gl00022013262413318713298554.5536/
chrUn_gl00022013337313380213357341.6175/
chrUn_gl00022014355714398414375537.1341/
chrUn_gl00022012711812754312734734.9587/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA310953260031999347.679/
rDNA280382882028551279.082/
rDNA231612381223569218.827/
chrUn_gl000220131617132037131840108.503/
rDNA27051274532725491.3099/
chrUn_gl00021463928661426452066.5992/
chrUn_gl00022013262413318713298554.5536/
chrUn_gl00022013337313379413357342.4083/
chr813981678813981893013981775537.4207/
chrUn_gl00022014355714398414375537.1341/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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