DNA Damage Atlas

GSM5827047-DIP_8oxodG_MCF10A_NAC_treated_IP_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17677053


Source Project ID:   

GSE194053

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

N-acetyl-l-cysteine


Treatment Time:   

1hr


Treatment Dose:   

1mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

OxiDIP-Seq


Others:   

control: GSM5827048-DIP_8oxodG_MCF10A_NAC_treated_Input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA310813261032030359.479/
rDNA280102940328538178.912/
rDNA225362381223583131.134/
chrUn_gl000220131617132037131826127.689/
rDNA270232745327243105.729/
chrUn_gl00021463633661436452465.6475/
chrUn_gl00022013259713379413359349.0015/
chr813981678313981893013981794240.4488/
chrUn_gl00022013548813708613679336.2137/
chrUn_gl00021411792011873411852635.1123/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA310953260032030365.211/
rDNA280382882028538313.379/
rDNA231612381223583229.169/
chrUn_gl000220131617132037131826127.689/
rDNA270512745327243113.093/
chrUn_gl00021463928661426452474.371/
chrUn_gl00022013337313379413359345.8813/
chrUn_gl00022012713712754312734142.1612/
chr813981678813981893013981794240.5432/
chrUn_gl00022012364612405512385640.1241/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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