DNA Damage Atlas

GSM5861448-MiDAS_H1299_minusBRCA2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17886827


Source Project ID:   

GSE196163

Cell Type:   

H1299


Organism:   

Homo sapiens


Treatment:   

Synchronised


Genotype:   

BRCA2-deficient


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199372.909/
rDNA31200325993189933.2922/
rDNA27200293992829918.2094/
chr2148119800481199994811989918.0038/
rDNA22600247992369917.9219/
rDNA18400201991929916.4008/
rDNA33800341993399914.2613/
rDNA36800423993959913.7765/
rDNA12600169991479911.3543/
chr71305174001305763991305468999.36246/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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