DNA Damage Atlas

GSM5861450-MiDAS_H1299_plusBRCA2plusAPH

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR17886825


Source Project ID:   

GSE196163

Cell Type:   

H1299


Organism:   

Homo sapiens


Treatment:   

Synchronised + Aphidicolin release


Treatment Dose:   

0.5uM


Genotype:   

BRCA2-proficient


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199124.085/
chr419085600193363991921099912.1052/
chr1011729380011734179911731779910.5297/
chr617740002066599192029910.176/
rDNA2800028799283999.23835/
chr22058616002059085992058850998.80114/
rDNA4160042399419998.70537/
chr41933900019521399194301998.56807/
chr148083520081246999810410998.07085/
chr22059094002060715992059904998.02614/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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