DNA Damage Atlas

GSM5866860-U2OS_siRAD51_MiDAS-seq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR17914843


Source Project ID:   

GSE196278

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

siRAD51 knockdown


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199125.61/
rDNA31200325993189910.7235/
rDNA4007995998.5371/
rDNA2720028799279996.57211/
rDNA1260016999147996.40887/
rDNA1600199917996.35742/
rDNA4020042399412995.63581/
rDNA9000919990995.46291/
chr41679446001679451991679448995.20268/
rDNA6400799971994.71379/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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