DNA Damage Atlas

GSM5925060-S1-seq_Spo11_null_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR18183573


Source Project ID:   

GSE197669

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.01187


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1298322462731.7402+
chr122012916220131651201314356.59307-
chr47715048877156667771544775.92992+
chr146645464166462772664604235.9083+
chr118313753283139588831375615.87957+
chr82125058721252632212526045.63554-
chr11858409318593009185900625.52159+
chrUn_JH584304271106206135.43063+
chr122182327621825522218233155.18698+
chr45494354954954906549489765.15104-
Download the Full Peak List


Visualization

Manual





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