DNA Damage Atlas


GSM5966603-190702-774-KO-KOH




Basic Information

Manual

Sample ID:   

SRR18441223


Source Project ID:   

GSE199198

Cell Type:   

Heart


Organism:   

Mus musculus


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3mM


Genotype:   

deficient in Rnase H1


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12970613099706194197061789583.31-
chr2225881742259068322590159183.665-
chr1657091615709385570917391.8833+
chr269355412693557846935562754.838-
chrUn_GL45639221741223702213552.702+
chr930289893029221302900247.1053+
chr930016773002464300207444.6672+
rDNA12683182331573837.9049+
chrUn_JH58430426373293632891836.9154+
chr1753152157531527655315255632.3539+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12970613099706191597061789655.713-
chr2225884752259059822590159211.534-
chrUn_GL45639221985223702213585.0805+
chr930019573002312300207482.2407+
chr1657091615709384570917370.3719+
chr1753152554531527645315255660.5898+
chrUn_JH58430477890783137801654.8351+
chr269355415693557846935562754.7445-
chr698899369890271989015040.2921-
chr930289893029211302900239.7343+
Download the Full Merged Peak List



Motif Analysis

Manual





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