DNA Damage Atlas


GSM6135100-1st_Activated_T_cMyc




Basic Information

Manual

Sample ID:   

SRR19179008


Source Project ID:   

GSE202887

Cell Type:   

Spleen


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Activated by a-CD3/CD28, a-IFNg, and a-IL-4


Treatment Time:   

2days


Genotype:   

HH7-tg Cas9 CD45.1


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr944046456440475894404661087266.5+
chr1269159219691596046915931414637+
chr1269361118693615576936142814003.5-
chr53106267431062903310628748948.39-
chr157656624376566591765663508832.67+
chr157655976276560112765598708782.2+
chr188269394482694297826940978707.57+
chr116011242601159760114528658.51-
chr111173240041173242061173242067608.34-
chr115501717455017376550171747608.34+
Download the Full Peak List



Motif Analysis

Manual





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