DNA Damage Atlas


GSM6135101-1st_Effector_T_1_cMyc




Basic Information

Manual

Sample ID:   

SRR19179007


Source Project ID:   

GSE202887

Cell Type:   

Gut


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Activated by a-CD3/CD28, a-IFNg, and a-IL-4


Treatment Time:   

2days


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10808703180872518087251523699-
chr2326731593267336332673159444109+
chr8705070887050730370507088262373+
chr7445588834455909544558883140300+
chr7453362834533664145336283124146+
chr911041867711041896011041867977315.7+
chr944046493440473794404672364826.1-
chr238343753383439583834375335021.9+
chr881689077816892858168928524654.8-
chr1269361278693614816936148115157.3-
Download the Full Peak List



Motif Analysis

Manual





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