DNA Damage Atlas


GSM6135103-1st_Effector_T_3_cMyc




Basic Information

Manual

Sample ID:   

SRR19179005


Source Project ID:   

GSE202887

Cell Type:   

Gut


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Activated by a-CD3/CD28, a-IFNg, and a-IL-4


Treatment Time:   

2days


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2100806961008092010080920887145-
chr17568878335688808656888082320820-
chr6127768201127768410127768410279314-
chr8111506596111506812111506597236942+
chr17480424464804265348042446224065+
chr2157353816157354024157354024188386-
chr13307316633073186830731663185292+
chr9440466124404702744046620170534+
chr11433466343348664334663141815+
chr17316820453168224631682245105430-
Download the Full Peak List



Motif Analysis

Manual





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