DNA Damage Atlas

GSM6180987-S1_END_seq_KM12_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364491


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000773


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr611700442117011941170065050.2793-
chr887374431873746708737443137.1646+
chr2040904584409058074090512237.0499-
chr1110507053310507173110507113330.1081-
chr319223012819223085319223061129.2629-
chr1941375031413756304137526327.6534+
chr857573685575746075757425927.4693-
chr376604241766045997660450727.2418-
chr2242335215423364284233579026.0992-
chrX37729474377303313773007125.8411-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr611700442117009741170065078.2849-
chr2040904610409054904090512253.5567-
chr731231160312316173123117644.9719+
chr1110507076410507161010507113340.7114-
chr1310504599710504659010504627739.7025+
chrX94827622948278659482765038.9402+
chrX37729657377300713773007138.8007-
chr940718227407187214071849337.9107+
chr887374431873746708737443137.7383+
chr1043145084315053431477936.7155+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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