DNA Damage Atlas

GSM6180989-S1_END_seq_RKO_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364489


Source Project ID:   

GSE203632

Cell Type:   

RKO


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000459


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6117004231170104711700650120.754-
chr815231042152319751523137239.0252+
chr389260936892611928926097533.8743+
chr414825444814825485514825444830.9356+
chr210740810910740866710740845228.8901+
chr158416782584173955841700928.4744+
chrX37729481377301783773007126.5979-
chr615853540158540631585383026.3594+
chr2040904846409057584090512226.1485-
chr1860367475603677016036770026.0725-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr611700423117010471170065090.6973-
chr550798593507988195079859833.0725+
chr815231042152319481523137229.8199+
chr389260936892611928926097529.4513+
chr414825444814825485514825444828.779+
chr469993030699932876999305027.3788+
chr1484842312848428908484254327.2947-
chr158416782584173955841700926.7416+
chrX37729677377301783773007126.7165-
chr1860367475603677016036770024.9851-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab