DNA Damage Atlas

GSM6180990-S1_END_seq_SW620_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364488


Source Project ID:   

GSE203632

Cell Type:   

SW620


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000167


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr753304996533061545330553022.9733-
chrUn_gl00021463644662296447619.9645+
chrX19469832194705801947020616.4523-
chr618670927186715221867115815.1706+
chr1664594651645957476459519714.8604-
chr1056414498564153105641499614.7413-
chr1673577448735783607357775514.6004-
chr1732756043276800327613113.8288-
chr220991532220991609620991560312.8936-
chr221344137921344184621344159212.1855-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr753305038533058285330553021.4554-
chrUn_gl00021463644662296447620.1444+
chr754466413544666585446644015.2018+
chr1732759153276641327613114.4048-
chr511312322011312347711312342113.4387-
chr741602273416025964160230313.2723+
chr220991532220991581920991560313.1595-
chr1111547013911547060311547038012.5137+
chr9_gl000199_random33994351873445011.9403+
chr320387463203881002038785511.4908+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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