DNA Damage Atlas

GSM6180991-S1_END_seq_SW837_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364486


Source Project ID:   

GSE203632

Cell Type:   

SW837


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.033609


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr753304950533058285330553017.6827-
chr2040812844408138374081323014.3613+
chr1056414416564153085641498814.1775-
chr1664594712645957346459518813.6905-
chr1110411075910411160410411138813.2784-
chr713745164113745265613745222113.0427-
chr1010781654610781726410781690112.7041+
chr1189592804895935728959319612.1573+
chr9_gl000199_random33827353263448212.0086-
chr1111477041911477151211477101210.9302-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34046350713448216.8531-
chr1112714973812715026212714978116.3663+
chr1387939338879396098793957215.779-
chr615853600158540511585383015.2529+
chr714569184014569231414569207113.7881+
chr1123836191238366532383634213.2727+
chr753305038533058285330553012.7392-
chr1673716514737168767371675112.6208-
chr1111477079311477146611477101212.4323-
chr1110411099610411160410411138811.4397-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab