DNA Damage Atlas

GSM6180992-S1_END_seq_SW48_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364485


Source Project ID:   

GSE203632

Cell Type:   

SW48


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000662


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr221450785321450837621450814049.4875+
chr611700067117011201170065042.1557-
chr179140842791417447914123940.7144+
chr415531020115531110115531066636.8863-
chr1149852546498534864985305136.2469+
chr857573829575748985757425934.9266-
chr1858304741583051595830474334.7246+
chr811153411511153465811153441333.3331-
chr395551192955517619555141032.6808-
chr1110644540610644628510644597131.2022+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6117004141170097411700650123.183-
chr857573829575745555757425960.7926-
chr179140948791416897914123959.0936+
chr1149852546498533064985305157.9023+
chr1870196221701964307019622553.9647+
chr415531020115531093415531066650.2075-
chr221450785321450837621450814048.0378+
chr124688553224688627424688585144.9177+
chr710977740610977825210977768244.3634+
chr1858304741583050715830474342.6495+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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