DNA Damage Atlas

GSM6180993-S1_END_seq_RKO_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364484


Source Project ID:   

GSE203632

Cell Type:   

RKO


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000558


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr611700188117012741170065034.9359-
chr857573693575745765757425925.8338-
chr1484842312848428908484254323.6214-
chr882702987827041468270359219.8844+
chrX52132064521326615213240018.543-
chr2040904561409057284090512216.3849-
chr259644684596453455964499016.1893+
chr1323888540238888222388855516.1782+
chr815230838152319481523137216.0476+
chr910618731110618851810618789815.0637-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr611700423117010471170065090.6973-
chr550798593507988195079859833.0725+
chr815231042152319481523137229.8199+
chr389260936892611928926097529.4513+
chr414825444814825485514825444828.779+
chr1063251420632514326325142428.6337+
chr469993030699932876999305027.3788+
chr1484842312848428908484254327.2947-
chr158416782584173955841700926.7416+
chrX37729677377301783773007126.7165-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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