DNA Damage Atlas

GSM6180994-S1_END_seq_SW620_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364487


Source Project ID:   

GSE203632

Cell Type:   

SW620


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00054


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021463644667206447617.2522+
chr9_gl000199_random33994353863445010.9097+
chr75330503853305828533055309.41353-
chrUn_gl0002281156851201991185668.41331-
chr93858989738590422385901218.34321-
chr51131232201131234771131234218.33447-
chr194597576445976888459763678.05087+
chr166737416867375987673750057.77975+
chr107578516375786046757854927.57714+
chr74160227341602596416022827.45107+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr753305038533058285330553021.4554-
chrUn_gl00021463644662296447620.1444+
chr754466413544666585446643715.2018+
chr1732759153276641327613314.4048-
chr511312322011312347711312342113.4387-
chr741602273416025964160228213.2723+
chr220991532220991581920991560313.1595-
chr1111547013911547060311547038012.5137+
chr9_gl000199_random33994351873445011.9403+
chr320387463203881002038785511.4908+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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