DNA Damage Atlas

GSM6180995-S1_END_seq_SW837_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364483


Source Project ID:   

GSE203632

Cell Type:   

SW837


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.014317


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34046350713445016.1969+
chr1387939194879396098793957216.0692-
rDNA63299141713.3403+
chr1112714973812715026212714978110.8576+
chr61585360015854051158538228.78917+
chr62918992429190124291901248.62734-
chrUn_gl0002251315541321311316898.16302+
chrUn_gl0002281151731199081186018.06621-
chr81295394001295402371295397287.85596+
chr111147707931147714661147710127.55295-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34046350713445016.8531+
chr1112714973812715026212714978116.3663+
chr1387939338879396098793957215.779-
chr615853600158540511585382215.2529+
chr714569184014569231414569206613.7881+
chr1123836191238366532383633113.2727+
chr753305038533058285330556012.7392-
chr1673716514737168767371675112.6208-
chr1111477079311477146611477101212.4323-
chr1110411099610411160410411138811.4397-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab