DNA Damage Atlas

GSM6180998-S1_END_seq_KM12_shWRN_NT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364480


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

3.56172


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005391


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr20409045274090570640905122114.679-
chr6117001831170112111700650111.095-
chrX377297553773039437730071108.293-
chr11105070681105071547105071131101.532-
chr319223003619223093719223061183.0622-
chr316506673816506735216506695781.6821-
chr533521287335220923352149378.3397-
chr2117685902176866211768637975.0813+
chr1387982085879828348798247672.0267+
chr1245018466450192294501874870.5656-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab