DNA Damage Atlas


GSM6180999-S1_END_seq_KM12_shWRN_Dox48h




Basic Information

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Sample ID:   

SRR19364478


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

48hrs


Treatment Dose:   

2mg/mL


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

3.82228


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.008009



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6117001011170119911700650117.745-
chr110461924610462006210461969087.663-
chr1019453856194547171945420480.4057+
chr673561922735626307356234479.7175-
chr813945367013945508613945446877.7259-
chr742852482428536404285302676.7959-
chr1210083249510083320410083286875.6836+
chrX37729577377302923773007174.8818-
chr2040904554409057594090512271.1307-
chr1831626610316271893162661567.3636+
Download the Full Peak List



Motif Analysis

Manual





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