DNA Damage Atlas


GSM6181001-S1_END_seq_KM12_G2arrest




Basic Information

Manual

Sample ID:   

SRR19364476


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

RO3306


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G2


Spike-in Intensity:   

11.6829


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010972



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6117003321170098511700650128.205-
chr1368511106685115696851112583.6893+
chr614204524914204574714204545583.021-
chr813700649413700711113700652065.8973+
chr217904602417904662317904636361.008+
chr2040904723409057734090512260.0432-
chr1110507053010507156410507113159.8353-
chr1210083254010083318810083286857.3775+
chr742852405428533004285302656.1564-
chr1155057403550581645505790355.7453+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr8337376523373787433737656107.088+
chr611700332117009851170065078.3247-
chr813700649413700710413700652071.2044+
chr1387981962879826888798247668.1945+
chr2040904723409057734090512268.0936-
chr1442516277425169184251647863.932-
chr1588455851884564628845615361.9076-
chr1480492226804927108049248961.458+
chr1019453903194547551945420460.2321+
chr614204524914204574714204545558.8433-
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab