DNA Damage Atlas


GSM6181002-S1_END_seq_KM12_APH600nM




Basic Information

Manual

Sample ID:   

SRR19364479


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Time:   

24hrs


Treatment Dose:   

600nM


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

2.22554


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00857



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr810174078101743221017410496.4202+
chr1056414760564151065641499666.8132-
chr611700133117011851170065061.568-
chr376604263766048377660449847.1885-
chr217904635017904689117904636345.9829+
chr889969380899698658996959743.3622-
chr319223023719223120419223061143.2005-
chr360811612608120906081183042.6277-
chr2040904667409057474090512242.6205-
chr1110507061710507172510507113142.4667-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr514750311414750335614750311666.2803+
chr810174078101743221017410456.6551+
chr2040904667409057124090512251.7066-
chr1056414771564151065641499648.0247-
chr110461925210461997310461969042.9901-
chr940718221407188664071849342.0014+
chr1588455760884564148845615341.8222-
chr217904635017904679617904636341.2455+
chr611700179117011851170065040.1634-
chr1019453703194546941945420438.9198+
Download the Full Merged Peak List



Motif Analysis

Manual





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