DNA Damage Atlas


GSM6181003-S1_END_seq_KM12_G1arrest




Basic Information

Manual

Sample ID:   

SRR19364475


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Palbociclib


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

Dox inducible shWRN


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001194



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr611700255117011231170065077.2664-
chr1110507053310507166910507113142.3634-
chr1484842084848431778484254342.2394-
chr614394975714395036614395005836.3264-
chr2040903946409058084090512235.9814-
chr173728968737301307372954034.7085+
chr650093305500942925009369132.9661-
chr940718227407190324071849332.3876+
chr1149852513498535084985305132.1742+
chr986122153861230558612265432.0431+
Download the Full Peak List



Motif Analysis

Manual





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