DNA Damage Atlas


GSM6181004-S1_END_seq_GM15851_DMSO




Basic Information

Manual

Sample ID:   

SRR19364474


Source Project ID:   

GSE203632

Cell Type:   

GM15851


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

48hrs


Treatment Dose:   

0.001


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.010949



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240473413114090935.7831-
chr1056414778564152765641499622.7329-
chr148386594838908483867921.8696+
chr123075112230755902307533618.4376-
chr2123406913234075842340725816.2311+
chr320387194203881112038785516.2134+
chrUn_gl00022010106310858510245116.0983+
chr713745175113745254813745222115.5979-
chr422676886226772362267694115.0469+
chr123145484231459482314573814.1296+
Download the Full Peak List



Motif Analysis

Manual





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