DNA Damage Atlas


GSM6181005-S1_END_seq_GM15851_PA1




Basic Information

Manual

Sample ID:   

SRR19364473


Source Project ID:   

GSE203632

Cell Type:   

GM15851


Organism:   

Homo sapiens


Treatment:   

polyamide PA1


Treatment Time:   

48hrs


Treatment Dose:   

1uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015596



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240322414824091724.8972-
chr320387316203884202038785516.1914+
chrUn_gl00022015704116069615995213.4901+
chr1056414491564150445641499612.6305-
chrUn_gl0002209972010858210245112.4524+
chrUn_gl00022010865811284311093812.3856-
chr272823626728247957282416112.2643-
chrUn_gl00022015263615682715491012.1102-
chr9_gl000199_random33819353863450711.9498-
chr1733643229336441843364385711.8849+
Download the Full Peak List



Motif Analysis

Manual





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