DNA Damage Atlas


GSM6181006-S1_END_seq_GM15850_DMSO_replicate1




Basic Information

Manual

Sample ID:   

SRR19364472


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000266



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr320387313203883142038785525.1829+
chr220991508920991596920991561924.0527+
chrUn_gl00022010890711128511094317.6508-
rDNA33595900368517.414+
chr9_gl000199_random33819351853445517.3581+
chr1387222247872232578722289616.1252+
chrUn_gl00021240354413884091716.0115-
chr511750248811750343311750302914.6048+
chr1652282432522835525228302213.9267+
chrUn_gl00022015689416058815994712.8296+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1056414761564153025641499626.2056-
chr2132458581324590873245881426.0853-
chrUn_gl00021240593413064091725.5771-
chr511322510411322540011322519023.8483+
chr810173723101743271017409123.2838+
chr1011814998311815033811815027623.2357-
chr320387347203881502038785522.5093+
chr741602279416027904160231521.9365+
chr1211613578011613604811613601821.3578-
chr1181853893818544418185412820.9678-
Download the Full Merged Peak List



Motif Analysis

Manual





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