DNA Damage Atlas


GSM6181007-S1_END_seq_GM15850_PA1_replicate1




Basic Information

Manual

Sample ID:   

SRR19364470


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

polyamide PA1


Treatment Time:   

48hrs


Treatment Dose:   

1uM


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000181



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33943351943445521.5792+
chr493570049935706589357021718.8221+
chr511750247511750339511750302917.7945+
chr320387048203883002038785916.8288+
chrUn_gl00021240485413384090916.5958-
chr220203171020203207920203171815.0048+
chr1534086271340869113408656814.7772+
chr1284614778846156298461502214.3488-
chr563570549635717316357112813.7996-
chrUn_gl00022010878011138211058613.492+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr753305297533056105330553525.1702-
chrUn_gl00021240598413384090925.1328-
chr1056414572564150805641499823.1963-
chr1835936447359366903593644723.1026+
chr320387350203883002038785921.3428+
chr417654695917654753917654719920.7082-
chr9_gl000199_random34007350773445520.2341+
chr116625702316625757716625730819.085+
chr2125764533257651522576467018.4402+
chr870396874703973197039709918.2122+
Download the Full Merged Peak List



Motif Analysis

Manual





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