DNA Damage Atlas


GSM6181008-S1_END_seq_GM15850_DMSO_replicate2




Basic Information

Manual

Sample ID:   

SRR19364469


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005154



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1056414761564153025641498039.296-
chr1211613578011613604811613600338.5823-
chr810173723101743271017411736.7038+
chr511322510411322540011322519036.4696+
chr1181853893818544418185411435.926-
chr1211322930211322992611322966432.9423-
chr1865330236653308056533051532.3467+
chr411151493711151556211151518431.7646-
chr713292766513292830013292793230.5479+
chr318347072183476061834709930.3618+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1056414761564153025641498026.2056-
chr2132458581324590873245879926.0853-
chrUn_gl00021240593413064090925.5771-
chr511322510411322540011322519023.8483+
chr810173723101743271017411723.2838+
chr1011814998311815033811815024823.2357-
chr320387347203881502038785522.5093+
chr741602279416027904160233621.9365+
chr1211613578011613604811613600321.3578-
chr1181853893818544418185411420.9678-
Download the Full Merged Peak List



Motif Analysis

Manual





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