DNA Damage Atlas


GSM6181009-S1_END_seq_GM15850_PA1_replicate2




Basic Information

Manual

Sample ID:   

SRR19364468


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

polyamide PA1


Treatment Time:   

48hrs


Treatment Dose:   

1uM


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008414



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1835936447359366903593646044.1114+
chr516411045916411105216411084937.5654+
chr1056414572564150805641498036.7306-
chr2125764533257651522576470033.3508+
chr116625702316625757716625731731.8494+
chr1112724488412724545312724534529.4593-
chr123057576223057606423057584727.6062+
chr1310201232510201280310201258527.4081+
chr870396860703973197039711727.3894+
chr614646121414646165114646130826.8504+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr753305297533056105330553025.1702-
chrUn_gl00021240598413384091725.1328-
chr1056414572564150805641498023.1963-
chr1835936447359366903593646023.1026+
chr320387350203883002038785521.3428+
chr417654695917654753917654718720.7082-
chr9_gl000199_random34007350773443520.2341+
chr116625702316625757716625731719.085+
chr2125764533257651522576470018.4402+
chr870396874703973197039711718.2122+
Download the Full Merged Peak List



Motif Analysis

Manual





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