DNA Damage Atlas

GSM6181010-S1_END_seq_GM15851_PairedwithP1_END_Seq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364471


Source Project ID:   

GSE203632

Cell Type:   

GM15851


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.03931


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr417654685917654734717654718734.8218-
chr741602270416025534160230329.5587+
chr1221251409212516902125145725.4051+
chrUn_gl00021240301414234090924.5135-
chr511936104111936128711936106023.5005+
chr2056664351566649145666461721.5482-
chr272823813728247307282419920.4893+
chr1110411108910411161810411138819.7043-
chr317538796617538857717538820719.4253-
chr2042904747429051034290502219.0687-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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