DNA Damage Atlas

GSM6181011-P1_END_seq_GM15851

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364467


Source Project ID:   

GSE203632

Cell Type:   

GM15851


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + P1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.024031


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1215947537215947963215947757156.788+
chr2728238257282470672824199119.4+
chr9103583122103583718103583469106.748-
chr563570908635715826357111598.1571-
chr251666087516663415166611993.7742+
chr250825622508264265082589292.4238+
chr616169207161698771616965289.2135-
chr415062608415062680215062637282.2403-
chr855682676556836985568316381.1277+
chr317538779217538844917538820778.9172-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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