DNA Damage Atlas

GSM6181012-S1_END_seq_iPSC_i3N_day5

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364466


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

5days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.096565


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33940352583448234.3957-
chrUn_gl00021240363412924090933.5691-
rDNA3352992712.4948-
chrUn_gl00021680500811418070611.8483-
chrUn_gl0002281149871201151185638.18506-
chr9_gl000199_random1290671315231313207.67612-
chr131006378801006381011006379007.29888+
chr19_gl000208_random08491856.68939-
chrUn_gl0002146301967366643826.58654+
chrUn_gl0002255048051353509516.46699-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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