DNA Damage Atlas

GSM6181014-S1_END_seq_iPSC_i3N_day2_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364464


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

2days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.119134


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34190350713450736.2321-
chr1173116788731171177311711521.8562-
chrUn_gl00021240301418874090918.4472-
chr611425147611425218011425179016.9693-
chr1877143856771444317714421415.086+
chr270882828708837957088344913.3377-
chr2042087385420879094208756012.9966+
chr357315419573156735731542410.3353+
chr121123460801123469071123464209.707+
chr117651811076518553765181389.18942+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34190350713450735.1957-
chrUn_gl00021240366418874090923.4494-
chrUn_gl00021680385808668070612.621-
chr270883075708837957088344912.2024-
chr611425147611425218011425179012.0739-
chr187714385677144431771442149.60168+
chr121458810214588470145881049.46893+
chrUn_gl0002281161481199911185639.46686-
chrUn_gl0002161630391641001635239.17634+
chrUn_gl0002161550411554121553558.93004-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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