DNA Damage Atlas

GSM6181015-S1_END_seq_iPSC_i3N_day1_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364463


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

1days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.055948


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33850348033449827.3235-
chrUn_gl00021240305415164090920.33-
chr713745175113745248713745220615.3374-
chr1011590906811590936111590930114.0634-
chr813224318813224354713224334313.8893+
chr567016002670165206701620613.3694-
chr315035039815035076015035040012.1481+
chr270882830708840017088345310.734-
chr1877143905771446617714421410.5804+
chr216130456216130478416130478410.4504-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34094348033449836.8332-
chrUn_gl00021240323415164090921.9145-
chr1112724504712724544912724534516.0584-
chr713745192813745248713745220615.563-
chrUn_gl00021680500809918070612.7295-
chr813224327813224354713224334312.6919+
chr117518122175186641751842310.5597+
chr1649710923497112174971114710.5214-
chr1011590906811590936111590930110.0699-
chr56701600267016520670162069.88951-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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