DNA Damage Atlas

GSM6181016-S1_END_seq_iPSC_replicate1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364462


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.161805


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34048350713448240.3128-
chrUn_gl00021240385413114091332.3815-
chr9_gl000199_random16660716967616829510.8946+
chrUn_gl0002168018180871807019.04856-
chr9_gl000199_random3993545920442378.95635+
chr21513290101513298021513294938.19439-
chrUn_gl0002281160281203331185637.86211-
chr166737444367375612673751706.81667+
chr9_gl000199_random1290691314961313346.44822-
chrUn_gl0002161690351706311696866.27974-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34134350713448235.4493-
chrUn_gl00021240456413114091332.7023-
chrUn_gl00021680501808718070116.1538-
chr21513291971513298021513294938.98752-
chrUn_gl0002281160281196011185638.95749-
chrUn_gl0002161628931638251635237.16953+
chrUn_gl0002161690351705231696866.62033-
chr41264804501264810091264808076.29526+
chr166737449867375395673751706.14857+
chr19_gl000208_random467042776.13874-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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