DNA Damage Atlas

GSM6181017-S1_END_seq_iPSC_i3N_day3_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364461


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

3days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.096831


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3193455134193455572193455530199.586-
chr7418786141883764187982185.408+
chr1227507952227508904227508519156.935-
chrUn_gl00021240461414734090931.1528-
chr9_gl000199_random33827351883449822.8014-
chrUn_gl0002281152761199781185639.40092-
chr19_gl000208_random08731627.54318-
chr9_gl000199_random1290861316941313206.77015-
chrUn_gl0002168018981226807066.70744-
chrUn_gl0002251108921131661112156.08132-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34012351843449830.0602-
chrUn_gl00021240463414734090929.1966-
chr1173116886731174467311711515.127-
chr1877143815771444497714421414.7802+
chr911010922911010957911010936610.9969+
chr27088315670883704708834539.2907-
chrUn_gl0002281154601199781185639.12225-
chrUn_gl0002161629111641171636099.10221-
chr61142512211142521881142517909.04099-
chrUn_gl0002168025181016807068.64766-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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