DNA Damage Atlas

GSM6181018-S1_END_seq_iPSC_i3N_day2_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364460


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

2days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.129519


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240366419474090926.6951-
chr741879164188519418798224.2366+
chr9_gl000199_random33827351643450722.8834-
chr122750789122750871322750851912.8499-
chrUn_gl00021680231808668071110.3963-
chrUn_gl0002281161481201621183609.28945-
rDNA8331212739.10846+
chr18288761828900982889817.89406-
chr195066698050667181506671817.70134-
chr19_gl000208_random07271577.2019+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34190350713450735.1957-
chrUn_gl00021240366418874090923.4494-
chrUn_gl00021680385808668071112.621-
chr270883075708837957088345312.2024-
chr611425147611425218011425178512.0739-
chr187714385677144431771442149.60168+
chr121458810214588470145881049.46893+
chrUn_gl0002281161481199911183609.46686-
chrUn_gl0002161630391641001636099.17634-
chrUn_gl0002161550411554121553408.93004-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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