DNA Damage Atlas

GSM6181019-S1_END_seq_iPSC_i3N_day1_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364459


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Harvested Time:   

1days


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.115117


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34094350773445027.1677+
chrUn_gl00021240323419474090917.5408-
chr1112724504712724544912724534513.1668-
chr1649710923497112174971114211.6205-
chrUn_gl0002168022680991807069.74954-
chr71374519281374525621374522019.63892-
chr166737447767375640673750059.14379+
chrUn_gl0002281154871201361185638.23887-
chr9_gl000199_random1301331314471313207.80006-
chr37660421276604786766045077.62857-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34094348033445036.8332+
chrUn_gl00021240323415164090921.9145-
chr1112724504712724544912724534516.0584-
chr713745192813745248713745220115.563-
chrUn_gl00021680500809918070612.7295-
chr813224327813224354713224334312.6919+
chr117518122175186641751839610.5597+
chr1649710923497112174971114210.5214-
chr1011590906811590936111590931110.0699-
chr56701600267016520670162069.88951-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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