DNA Damage Atlas

GSM6181020-S1_END_seq_iPSC_replicate2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364458


Source Project ID:   

GSE203632

Cell Type:   

iPSCs


Organism:   

Homo sapiens


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.188134


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240456414174090927.2464-
chr9_gl000199_random34134354093450719.9199-
chrUn_gl0002168050181186807068.87679-
chrUn_gl0002281154951196011183607.94854-
chr21513291971513298761513294916.57936-
chrUn_gl0002161689361705231696866.15126-
chr19_gl000208_random47041835.85014+
chr9_gl000199_random1291131316511313275.248-
chrUn_gl0002161448971463681453774.61169-
chrUn_gl0002257029671534712264.14315-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random34134350713450735.4493-
chrUn_gl00021240456413114090932.7023-
chrUn_gl00021680501808718070616.1538-
chr21513291971513298021513294918.98752-
chrUn_gl0002281160281196011183608.95749-
chrUn_gl0002161628931638251636097.16953-
chrUn_gl0002161690351705231696866.62033-
chr41264804501264810091264808076.29526+
chr166737449867375395673750056.14857+
chr19_gl000208_random467041836.13874+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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