DNA Damage Atlas


GSM6181021-END_Seq_KM12_shWRN_NT




Basic Information

Manual

Sample ID:   

SRR19364457


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

Doxycycline inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

2.72153


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000269



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr629189866291901252919012413.687-
chr1464412978644140156441342012.0116+
chrX37729562377300713773007111.501-
chrX57963101579633405796310111.2944+
chr811457657011457677211457657011.1091+
chrUn_gl00021240350413974091711.0582-
chr9_gl000199_random33923351713453310.4759-
chr6_cox_hap270863470901970901910.3058-
chrUn_gl0002281154461198591185339.99325-
chrUn_gl0002251311731320791318019.87156-
Download the Full Peak List



Motif Analysis

Manual





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