DNA Damage Atlas


GSM6181022-END_Seq_KM12_shWRN_Dox48h




Basic Information

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Sample ID:   

SRR19364456


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Doxycycline


Treatment Time:   

48hrs


Treatment Dose:   

2mg/mL


Genotype:   

Doxycycline inducible shWRN


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

4.14339


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.000289



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX37729627377300713773007118.7061-
chr9_gl000199_random34188348283451617.3697-
chrUn_gl00021616306916408816352313.2291+
chr1878016048780162887801627813.177-
chr1212896965212897828212897412811.0861+
chrUn_gl00022585313858588563311.0779+
chrUn_gl00022513153313198213171310.8852+
chr1464412709644138556441342010.8153+
chr810694702310695585410695077810.4901-
chr2048592864485964204859572910.3397+
Download the Full Peak List



Motif Analysis

Manual





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