Sample Detail

Basic Information

Manual

Sample ID:

SRR19364455

Source Project ID:

GSE203632

Cell Type:

KM12

Organism:

Homo sapiens

Treatment:

Genotype:

Doxycycline inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NexSeq550

Technique:

END-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.000632

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	83350272	83350472	83350272	67.9627	+
chr17	48450556	48450756	48450556	23.1073	+
chr19	5790991	5791374	5791174	22.7134	+
chr14	64412946	64413929	64413420	22.4007	+
chr21	25764590	25764982	25764700	22.1919	+
chr10	117956353	117956575	117956353	20.8174	+
chr2	195357323	195357706	195357506	20.584	+
chr8	69818139	69819587	69818339	17.8355	-
chr9_gl000199_random	155343	156898	155994	17.4824	-
chr7	82259755	82260486	82260189	17.4788	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	83350272	83350472	83350272	45.1393	+
chr17	48450556	48450756	48450556	41.5407	+
chr19	5791174	5791374	5791174	27.2463	+
chr1	109235172	109235522	109235522	26.9357	-
chr21	25764590	25764931	25764700	26.662	+
chr8	51279035	51279700	51279351	22.8841	-
chr8	55468026	55468227	55468026	22.4909	+
chr14	64412946	64413789	64413420	21.5853	+
chr4	53578547	53578833	53578833	21.3596	-
chr6	136610984	136611250	136610984	21.1497	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download