Sample Detail

Basic Information

Manual

Sample ID:

SRR19364454

Source Project ID:

GSE203632

Cell Type:

KM12

Organism:

Homo sapiens

Treatment:

Genotype:

Doxycycline inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NexSeq550

Technique:

END-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.000101

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr17	48450338	48450756	48450556	28.9182	+
chr4	53578547	53578833	53578833	22.7581	-
chr2	80994113	80995141	80994925	21.4368	+
chr8	51278980	51280004	51279434	20.7487	+
chr1	109234926	109235706	109235522	19.0734	-
chr1	208037448	208037648	208037448	18.5966	+
chr12	122988964	122989165	122989164	17.8102	-
chr20	5096754	5097043	5096964	17.374	-
chr7	82259910	82260482	82260197	17.0686	+
chr8	69818150	69819531	69818441	16.9672	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	83350272	83350472	83350272	45.1393	+
chr17	48450556	48450756	48450556	41.5407	+
chr8	102939888	102939899	102939899	29.2629	-
chr19	5791174	5791374	5791174	27.2463	+
chr1	109235172	109235522	109235522	26.9357	-
chr8	51279035	51279700	51279434	22.8841	+
chr8	55468026	55468227	55468026	22.4909	+
chr14	64412946	64413789	64413420	21.5853	+
chr4	53578547	53578833	53578833	21.3596	-
chr6	136610984	136611250	136610984	21.1497	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download