DNA Damage Atlas

GSM6181025-S1_END_seq_GM15851_paired-end

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19364453


Source Project ID:   

GSE203632

Cell Type:   

GM15851


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.034195


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr314605543314605564114605563357.0839-
chr123835179523835203123835181756.1614+
chr615371721915371748815371725546.1922+
chr1759583144595833995958317345.4797+
chr1660261542602617716026157044.6144+
chr2050931504509317425093154242.9273+
chr220049097820049119720049118641.6082-
chr698524723985249449852493239.9822-
chrX78212941782131637821295639.8021+
chr796445478964457899644568638.1783-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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