DNA Damage Atlas


GSM6195478-S1-END-seq_SW48_DMSO




Basic Information

Manual

Sample ID:   

SRR19400126


Source Project ID:   

GSE203632

Cell Type:   

SW48


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004737



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr272823949728244117282419959.2507+
chr611700366117008871170065054.0917-
chr770392298703925577039255749.9128-
chr1831626347316269563162661046.3816+
chr1480207112802073808020711743.6542+
chr1838973032389735493897329541.2577+
chr110923202210923243710923223341.1186-
chr939373727393740603937374039.1123+
chr1384627128846274448462716037.8414+
chr415531044715531096815531066636.2886-
Download the Full Peak List



Motif Analysis

Manual





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