DNA Damage Atlas


GSM6195479-S1-END-seq_SW48_G1arrest




Basic Information

Manual

Sample ID:   

SRR19400125


Source Project ID:   

GSE203632

Cell Type:   

SW49


Organism:   

Homo sapiens


Treatment:   

Palbociclib


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002551



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr611700137117010491170065067.9044-
chr1155057649550583495505790364.6398+
chr857573887575745425757425962.6882-
chr179140913791414727914123961.4331+
chr1770083257700839387008347259.1544-
chr316506669216506733016506695758.4837-
chr1831626248316268543162661056.3899+
chr858822115882665588245952.6588+
chr415531019715531099515531066645.1074-
chrX92721747927219699272176944.2623+
Download the Full Peak List



Motif Analysis

Manual





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