DNA Damage Atlas


GSM6195480-S1-END-seq_MCF10A_DMSO




Basic Information

Manual

Sample ID:   

SRR19400124


Source Project ID:   

GSE203632

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.015034



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021463598665266507516.8953+
chr9_gl000199_random33994351463445011.3195+
chrUn_gl00022811494712033611860110.2103-
chr143340744433407704334076649.68584-
chr121132293001132300631132296758.68089-
chr41718360841718366051718363387.74704-
chrUn_gl0002168021781183807067.42804-
chr111154702211154706321154702987.38633+
chr121285589691285594791285592117.373+
chr47233231672333257723326507.22211-
Download the Full Peak List



Motif Analysis

Manual





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