DNA Damage Atlas


GSM6195481-S1-END-seq_MCF10A_G1arrest




Basic Information

Manual

Sample ID:   

SRR19400123


Source Project ID:   

GSE203632

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

Palbociclib


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00408



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr698524722985249359852493213.1711-
chr9_gl000199_random34190350713450713.1419-
chr1056414780564150615641499611.8855-
chr1560657795606580186065801211.3824-
chr2143155957431568124315625711.2499+
chr629189795291901242919012410.9636-
chrUn_gl00022811498312020511860110.9494-
chrUn_gl00021463123667536507510.0471+
chr213245850032459091324588109.41856-
chrUn_gl0002161620461648341636098.673-
Download the Full Peak List



Motif Analysis

Manual





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