DNA Damage Atlas


GSM6195482-S1-END-seq_GM15850_DMSO




Basic Information

Manual

Sample ID:   

SRR19400121


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.028425



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr272823769728247357282419947.5027+
chr1110411115610411160710411138832.877-
chrUn_gl00021240304413654090932.2328-
chr1190450595904508199045060130.6949+
chr250313613503142045031395029.2366-
chrUn_gl00021680501808808070128.08-
chr855682739556836385568316524.6735+
chr220991516020991605520991560122.1451-
chr416193656116193704416193684420.6722+
chr1542549233425496934254952120.2761-
Download the Full Peak List



Motif Analysis

Manual





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